PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zpz_sc03882.1.g00060.1.sm.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 240aa    MW: 25406.5 Da    PI: 4.8366
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zpz_sc03882.1.g00060.1.sm.mkgenomeZGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-183382255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +ykGVr ++ +g+Wv+eIr p   ++++r++lg++ tae Aa+a++aa ++l+g
  Zpz_sc03882.1.g00060.1.sm.mk 33 QYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 82
                                  69****998.**********9...336************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-303290IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-193391IPR016177DNA-binding domain
SMARTSM003804.0E-343396IPR001471AP2/ERF domain
PROSITE profilePS5103221.5753390IPR001471AP2/ERF domain
PfamPF008475.3E-113382IPR001471AP2/ERF domain
CDDcd000181.36E-173392No hitNo description
PRINTSPR003675.7E-93445IPR001471AP2/ERF domain
PRINTSPR003675.7E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MVKNAQLQAE AAINGAAGNA AAARQQQHGG KRQYKGVRMR SWGSWVSEIR APNQKTRIWL  60
GSYSTAEAAA RAYDAALLCL KGSAADLNFP VHLPFHIPAA AMSPKSIQRV AAAAAANACS  120
PLQQGAGPAS YPAAAAAIND AASHPPCGYG VDSASWGVSS PETVITDHQY CETMMARDDG  180
MMGDVDYGSL ADIEAFLFQS PKCMEYGMMD PCSTFFAPAP MAADWEEEGE IDLWSFSSCN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3gcc_A7e-143293466ATERF1
2gcc_A7e-143293466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0835321e-122BT083532.1 Zea mays full-length cDNA clone ZM_BFb0008I08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454612.12e-94hypothetical protein SORBIDRAFT_04g034290
TrEMBLC5XSW42e-94C5XSW4_SORBI; Putative uncharacterized protein Sb04g034290
STRINGSb04g034290.16e-94(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21910.13e-27ERF family protein